IL_3BO4_006

3D structure

PDB id

3BO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A relaxed active site following exon ligation by a group I intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BO4_006 not in the Motif Atlas

Geometric match to IL_1U6B_005

Geometric discrepancy: 0.1203

The information below is about IL_1U6B_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

3BO4|1|B|C|100
3BO4|1|B|U|101
3BO4|1|B|U|102
*
3BO4|1|B|A|117
3BO4|1|B|U|118
3BO4|1|B|G|119

Current chains

Chain B

Group I intron P9

Nearby chains