IL_3BO4_011

3D structure

PDB id

3BO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A relaxed active site following exon ligation by a group I intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CUAAG*UAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BO4_011 not in the Motif Atlas

Geometric match to IL_5Y7M_005

Geometric discrepancy: 0.121

The information below is about IL_5Y7M_005

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_87739.1

Basepair signature

cWW-tWH-cSH-cWW

Number of instances in this motif group

10

Unit IDs

3BO4|1|B|C|147
3BO4|1|B|U|148
3BO4|1|B|A|149
3BO4|1|B|A|150
3BO4|1|B|G|151
*
3BO4|1|B|U|160
3BO4|1|B|A|161
3BO4|1|B|U|162
3BO4|1|B|G|163

Current chains

Chain B

Group I intron P9

Nearby chains