IL_3BO4_012

3D structure

PDB id

3BO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A relaxed active site following exon ligation by a group I intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GGAG*CACAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BO4_012 not in the Motif Atlas

Geometric match to IL_1U6B_011

Geometric discrepancy: 0.1361

The information below is about IL_1U6B_011

Detailed Annotation

Reverse kink-turn

Broad Annotation

No text annotation

Motif group

IL_09908.1

Basepair signature

cWW-L-tHH-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

3BO4|1|B|G|181
3BO4|1|B|G|182
3BO4|1|B|A|183
3BO4|1|B|G|184
*
3BO4|1|C|C|197
3BO4|1|C|A|198
3BO4|1|C|C|199
3BO4|1|C|A|200
3BO4|1|C|A|201
3BO4|1|C|A|202
3BO4|1|C|C|203

Current chains

Chain B

Group I intron P9

Chain C

DNA/RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*A)-D(P*DG)-3')

Nearby chains