IL_3BWP_005

3D structure

PDB id

3BWP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a self-spliced group II intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*UUGAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BWP_005 not in the Motif Atlas

Geometric match to IL_3IGI_005

Geometric discrepancy: 0.0896

The information below is about IL_3IGI_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_26685.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

3BWP|1|A|G|128
3BWP|1|A|G|129
*
3BWP|1|A|U|234
3BWP|1|A|U|235
3BWP|1|A|G|236
3BWP|1|A|A|237
3BWP|1|A|U|238

Current chains

Chain A

Group IIC intron

Nearby chains