3BWP | Motifs

Download loops

8 Hairpin loops
13 Internal loops
1 Junction loops

Valid loops

3D	Loop id	Location	Annotation; motif group	Mapped info
	HL_3BWP_001	1/A/30:38	T-loop with 2 stacked bulged bases	geometric HL_3IGI_001 HL_33597.3
	HL_3BWP_002	1/A/47:61	Pseudoknot geometry with G-bulge	geometric HL_3IGI_002 HL_94488.1
	HL_3BWP_003	1/A/89:94	GNRA	geometric HL_4V9F_065 HL_34789.4
	HL_3BWP_005	1/A/274:279	GNRA	geometric HL_3IGI_006 HL_34789.4

Problematic loops

#	loop id	Problem	Sequence
	HL_3BWP_004	missing nts	No text annotation
	HL_3BWP_006	missing nts	Externally structured
	HL_3BWP_007	poor quality numbers	UNCG
	HL_3BWP_008	poor quality numbers	Other HL

Valid loops

3D	Loop id	Location	Annotation; motif group	Mapped info
	IL_3BWP_001	1/A/10:14, 1/A/257:262	No text annotation	geometric IL_3IGI_001 IL_99498.1
	IL_3BWP_003	1/A/70:74, 1/A/113:117	Triple sheared	geometric IL_3IGI_002 IL_15190.2
	IL_3BWP_004	1/A/76:79, 1/A/103:111	No text annotation	geometric IL_3IGI_003 IL_89312.1
	IL_3BWP_013	1/A/82:84, 1/A/99:100	No text annotation
	IL_3BWP_005	1/A/128:129, 1/A/234:238	Multiple bulged bases	geometric IL_3IGI_005 IL_26685.1
	IL_3BWP_008	1/A/172:175, 1/A/190:194	UAA/GAN related	geometric IL_3IGI_009 IL_77691.7
	IL_3BWP_012	1/A/365:366, 1/A/375:378	Multiple bulged bases	geometric IL_3IGI_013 IL_44609.2

Problematic loops

#	loop id	Problem	Sequence
	IL_3BWP_002	complementary	Isolated non-canonical cWW pair
	IL_3BWP_006	missing nts	Multiple bulged bases
	IL_3BWP_007	missing nts	No text annotation
	IL_3BWP_009	poor quality numbers	No text annotation
	IL_3BWP_010	missing nts	No text annotation
	IL_3BWP_011	missing nts	Receptor of 11-nt loop-receptor motif

Valid loops

3D	Loop id	Location	Annotation; motif group	Mapped info
	J5_3BWP_001	1/A/24:28, 1/A/40:43, 1/A/65:68, 1/A/119:123, 1/A/243:247	No text annotation

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers

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