IL_3BWP_011

3D structure

PDB id

3BWP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a self-spliced group II intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAG*CUAAG*G

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BWP_011 not in the Motif Atlas

Geometric match to IL_5XTM_001

Geometric discrepancy: 0.1095

The information below is about IL_5XTM_001

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_87739.1

Basepair signature

cWW-tWH-cSH-cWW

Number of instances in this motif group

10

Unit IDs

3BWP|1|A|U|332
3BWP|1|A|A|333
3BWP|1|A|G|335
*
3BWP|1|A|C|346
3BWP|1|A|U|347
3BWP|1|A|A|348
3BWP|1|A|A|349
3BWP|1|A|G|350
*
3BWP|1|A|G|350

Current chains

Chain A

Group IIC intron

Nearby chains