IL_3CC2_012

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CC2_012 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0375

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3CC2|1|0|C|290
3CC2|1|0|C|291
3CC2|1|0|G|292
3CC2|1|0|A|293
3CC2|1|0|C|294
3CC2|1|0|C|295
3CC2|1|0|G|296
*
3CC2|1|0|C|355
3CC2|1|0|C|356
3CC2|1|0|A|357
3CC2|1|0|G|358
3CC2|1|0|U|359
3CC2|1|0|A|360
3CC2|1|0|C|361
3CC2|1|0|G|362

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains