IL_3CC2_019

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CC2_019 not in the Motif Atlas

Homologous match to IL_4V9F_019

Geometric discrepancy: 0.0524

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3CC2|1|0|U|567
3CC2|1|0|G|568
3CC2|1|0|A|569
3CC2|1|0|C|570
3CC2|1|0|C|571
3CC2|1|0|G|572
*
3CC2|1|0|C|585
3CC2|1|0|C|586
3CC2|1|0|A|587
3CC2|1|0|G|588
3CC2|1|0|U|589
3CC2|1|0|A|590
3CC2|1|0|A|591

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain W

50S ribosomal protein L30P