IL_3CC2_038

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UCCCCAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CC2_038 not in the Motif Atlas

Homologous match to IL_4V9F_038

Geometric discrepancy: 0.0253

The information below is about IL_4V9F_038

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

3CC2|1|0|U|1101
3CC2|1|0|C|1102
3CC2|1|0|C|1103
3CC2|1|0|C|1104
3CC2|1|0|C|1105
3CC2|1|0|A|1106
3CC2|1|0|A|1107
3CC2|1|0|G|1108
*
3CC2|1|0|C|1254
3CC2|1|0|A|1255

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain J

50S ribosomal protein L13P

Chain W

50S ribosomal protein L30P