IL_3CC2_053

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAGUGAAAG*CGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CC2_053 not in the Motif Atlas

Homologous match to IL_4V9F_054

Geometric discrepancy: 0.1189

The information below is about IL_4V9F_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41853.1

Basepair signature

cWW-L-tHH-L-tHS-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

3CC2|1|0|C|1521
3CC2|1|0|A|1522
3CC2|1|0|G|1523
3CC2|1|0|U|1524
3CC2|1|0|G|1525
3CC2|1|0|A|1526
3CC2|1|0|A|1527
3CC2|1|0|A|1528
3CC2|1|0|G|1529
*
3CC2|1|0|C|1662
3CC2|1|0|G|1663
3CC2|1|0|A|1664
3CC2|1|0|G|1665

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P