IL_3CC2_056

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCAACU*ACGAACG

Length

13 nucleotides

Bulged bases

3CC2|1|0|C|1617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CC2_056 not in the Motif Atlas

Homologous match to IL_4V9F_057

Geometric discrepancy: 0.0341

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

3CC2|1|0|C|1578
3CC2|1|0|C|1579
3CC2|1|0|A|1580
3CC2|1|0|A|1581
3CC2|1|0|C|1582
3CC2|1|0|U|1583
*
3CC2|1|0|A|1612
3CC2|1|0|C|1613
3CC2|1|0|G|1614
3CC2|1|0|A|1615
3CC2|1|0|A|1616
3CC2|1|0|C|1617
3CC2|1|0|G|1618

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains