3D structure

PDB id
3CC2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CCAACU*ACGAACG
Length
13 nucleotides
Bulged bases
3CC2|1|0|C|1617
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3CC2_056 not in the Motif Atlas
Homologous match to IL_4V9F_057
Geometric discrepancy: 0.0341
The information below is about IL_4V9F_057
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_34822.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

3CC2|1|0|C|1578
3CC2|1|0|C|1579
3CC2|1|0|A|1580
3CC2|1|0|A|1581
3CC2|1|0|C|1582
3CC2|1|0|U|1583
*
3CC2|1|0|A|1612
3CC2|1|0|C|1613
3CC2|1|0|G|1614
3CC2|1|0|A|1615
3CC2|1|0|A|1616
3CC2|1|0|C|1617
3CC2|1|0|G|1618

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

Coloring options:


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