IL_3CC2_057

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGGAAG*CAGGAAG

Length

13 nucleotides

Bulged bases

3CC2|1|0|G|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CC2_057 not in the Motif Atlas

Homologous match to IL_4V9F_058

Geometric discrepancy: 0.0438

The information below is about IL_4V9F_058

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_32016.1

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

3CC2|1|0|U|1587
3CC2|1|0|G|1588
3CC2|1|0|G|1589
3CC2|1|0|A|1590
3CC2|1|0|A|1591
3CC2|1|0|G|1592
*
3CC2|1|0|C|1602
3CC2|1|0|A|1603
3CC2|1|0|G|1604
3CC2|1|0|G|1605
3CC2|1|0|A|1606
3CC2|1|0|A|1607
3CC2|1|0|G|1608

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae