IL_3CC2_064

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

3CC2|1|0|A|1857, 3CC2|1|0|C|1872, 3CC2|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CC2_064 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.018

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3CC2|1|0|C|1854
3CC2|1|0|G|1855
3CC2|1|0|C|1856
3CC2|1|0|A|1857
3CC2|1|0|A|1858
3CC2|1|0|A|1859
3CC2|1|0|U|1860
*
3CC2|1|0|A|1869
3CC2|1|0|C|1870
3CC2|1|0|U|1871
3CC2|1|0|C|1872
3CC2|1|0|G|1873
3CC2|1|0|U|1874
3CC2|1|0|A|1875
3CC2|1|0|C|1876
3CC2|1|0|G|1877

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae