IL_3CC2_070

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

3CC2|1|0|G|1979, 3CC2|1|0|U|1985, 3CC2|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CC2_070 not in the Motif Atlas

Homologous match to IL_4V9F_071

Geometric discrepancy: 0.0271

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

3CC2|1|0|C|1975
3CC2|1|0|G|1976
3CC2|1|0|U|1977
3CC2|1|0|A|1978
3CC2|1|0|G|1979
3CC2|1|0|U|1980
3CC2|1|0|A|1981
3CC2|1|0|C|1982
3CC2|1|0|C|1983
3CC2|1|0|U|1984
3CC2|1|0|U|1985
3CC2|1|0|G|1986
*
3CC2|1|0|C|2002
3CC2|1|0|U|2003
3CC2|1|0|U|2004
3CC2|1|0|G|2005

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains