3D structure

PDB id
3CC2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
UACCC*GAACA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3CC2_101 not in the Motif Atlas
Homologous match to IL_4V9F_104
Geometric discrepancy: 0.0437
The information below is about IL_4V9F_104
Detailed Annotation
Symmetric double minor groove platform
Broad Annotation
No text annotation
Motif group
IL_58103.11
Basepair signature
cWW-cSH-cWS-L-tSW-R-R-cWW
Number of instances in this motif group
9

Unit IDs

3CC2|1|9|U|33
3CC2|1|9|A|34
3CC2|1|9|C|35
3CC2|1|9|C|36
3CC2|1|9|C|37
*
3CC2|1|9|G|43
3CC2|1|9|A|44
3CC2|1|9|A|45
3CC2|1|9|C|46
3CC2|1|9|A|47

Current chains

Chain 9
5S RIBOSOMAL RNA

Nearby chains

Chain 0
Large subunit ribosomal RNA; LSU rRNA
Chain D
50S ribosomal protein L5P
Chain N
50S ribosomal protein L18P

Coloring options:


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