IL_3CC4_012

3D structure

PDB id

3CC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CC4_012 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0544

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3CC4|1|0|C|290
3CC4|1|0|C|291
3CC4|1|0|G|292
3CC4|1|0|A|293
3CC4|1|0|C|294
3CC4|1|0|C|295
3CC4|1|0|G|296
*
3CC4|1|0|C|355
3CC4|1|0|C|356
3CC4|1|0|A|357
3CC4|1|0|G|358
3CC4|1|0|U|359
3CC4|1|0|A|360
3CC4|1|0|C|361
3CC4|1|0|G|362

Current chains

Chain 0

23S ribosomal RNA

Nearby chains