3D structure

PDB id
3CC4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GA*UCC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3CC4_034 not in the Motif Atlas
Geometric match to IL_4V9F_034
Geometric discrepancy: 0.0403
The information below is about IL_4V9F_034
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.2
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
44

Unit IDs

3CC4|1|0|G|956
3CC4|1|0|A|957
*
3CC4|1|0|U|1009
3CC4|1|0|C|1010
3CC4|1|0|C|1011

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain 9
5S ribosomal RNA; 5S rRNA
Chain H
50S ribosomal protein L10e
Chain N
50S ribosomal protein L18P
Chain Q
50S ribosomal protein L21e

Coloring options:


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