3D structure

PDB id
3CC4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GCGACCG*CAAAC
Length
12 nucleotides
Bulged bases
3CC4|1|0|G|960
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3CC4_035 not in the Motif Atlas
Homologous match to IL_4V9F_035
Geometric discrepancy: 0.04
The information below is about IL_4V9F_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06691.1
Basepair signature
cWW-cWS-L-R-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

3CC4|1|0|G|958
3CC4|1|0|C|959
3CC4|1|0|G|960
3CC4|1|0|A|961
3CC4|1|0|C|962
3CC4|1|0|C|963
3CC4|1|0|G|964
*
3CC4|1|0|C|1004
3CC4|1|0|A|1005
3CC4|1|0|A|1006
3CC4|1|0|A|1007
3CC4|1|0|C|1008

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain 9
5S ribosomal RNA; 5S rRNA
Chain H
50S ribosomal protein L10e
Chain N
50S ribosomal protein L18P
Chain Q
50S ribosomal protein L21e

Coloring options:


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