IL_3CCE_019

3D structure

PDB id

3CCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535A

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCE_019 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.068

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3CCE|1|0|U|567
3CCE|1|0|G|568
3CCE|1|0|A|569
3CCE|1|0|C|570
3CCE|1|0|C|571
3CCE|1|0|G|572
*
3CCE|1|0|C|585
3CCE|1|0|C|586
3CCE|1|0|A|587
3CCE|1|0|G|588
3CCE|1|0|U|589
3CCE|1|0|A|590
3CCE|1|0|A|591

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain W

50S ribosomal protein L30P