IL_3CCE_038

3D structure

PDB id

3CCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535A

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UCCCCAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCE_038 not in the Motif Atlas

Homologous match to IL_4V9F_038

Geometric discrepancy: 0.0452

The information below is about IL_4V9F_038

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

3CCE|1|0|U|1101
3CCE|1|0|C|1102
3CCE|1|0|C|1103
3CCE|1|0|C|1104
3CCE|1|0|C|1105
3CCE|1|0|A|1106
3CCE|1|0|A|1107
3CCE|1|0|G|1108
*
3CCE|1|0|C|1254
3CCE|1|0|A|1255

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain J

50S ribosomal protein L13P

Chain W

50S ribosomal protein L30P