IL_3CCE_040

3D structure

PDB id

3CCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535A

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

3CCE|1|0|C|1245, 3CCE|1|0|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCE_040 not in the Motif Atlas

Homologous match to IL_4V9F_040

Geometric discrepancy: 0.1446

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

3CCE|1|0|U|1115
3CCE|1|0|U|1116
3CCE|1|0|A|1117
3CCE|1|0|A|1118
3CCE|1|0|G|1119
3CCE|1|0|U|1120
3CCE|1|0|G|1121
*
3CCE|1|0|C|1243
3CCE|1|0|U|1244
3CCE|1|0|C|1245
3CCE|1|0|A|1246
3CCE|1|0|A|1247
3CCE|1|0|A|1248

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P