IL_3CCE_047

3D structure

PDB id

3CCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535A

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GAUGGAAG*UGGAC

Length

13 nucleotides

Bulged bases

3CCE|1|0|G|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCE_047 not in the Motif Atlas

Homologous match to IL_4V9F_048

Geometric discrepancy: 0.0392

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

3CCE|1|0|G|1312
3CCE|1|0|A|1313
3CCE|1|0|U|1314
3CCE|1|0|G|1315
3CCE|1|0|G|1316
3CCE|1|0|A|1317
3CCE|1|0|A|1318
3CCE|1|0|G|1319
*
3CCE|1|0|U|1338
3CCE|1|0|G|1339
3CCE|1|0|G|1340
3CCE|1|0|A|1341
3CCE|1|0|C|1342

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain Y

50S ribosomal protein L32e