IL_3CCE_084

3D structure

PDB id

3CCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535A

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UUC*GUGAG

Length

8 nucleotides

Bulged bases

3CCE|1|0|G|2611, 3CCE|1|0|A|2612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCE_084 not in the Motif Atlas

Geometric match to IL_4V9F_087

Geometric discrepancy: 0.0582

The information below is about IL_4V9F_087

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

3CCE|1|0|U|2545
3CCE|1|0|U|2546
3CCE|1|0|C|2547
*
3CCE|1|0|G|2609
3CCE|1|0|U|2610
3CCE|1|0|G|2611
3CCE|1|0|A|2612
3CCE|1|0|G|2613

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P