IL_3CCE_089

3D structure

PDB id

3CCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535A

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

AUAGUAC*GGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCE_089 not in the Motif Atlas

Geometric match to IL_4V9F_092

Geometric discrepancy: 0.0711

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

3CCE|1|0|A|2689
3CCE|1|0|U|2690
3CCE|1|0|A|2691
3CCE|1|0|G|2692
3CCE|1|0|U|2693
3CCE|1|0|A|2694
3CCE|1|0|C|2695
*
3CCE|1|0|G|2700
3CCE|1|0|G|2701
3CCE|1|0|A|2702
3CCE|1|0|A|2703
3CCE|1|0|C|2704
3CCE|1|0|U|2705

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain E

50S ribosomal protein L6P

Chain K

50S ribosomal protein L14P