IL_3CCJ_012

3D structure

PDB id

3CCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCJ_012 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.1002

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3CCJ|1|0|C|290
3CCJ|1|0|C|291
3CCJ|1|0|G|292
3CCJ|1|0|A|293
3CCJ|1|0|C|294
3CCJ|1|0|C|295
3CCJ|1|0|G|296
*
3CCJ|1|0|C|355
3CCJ|1|0|C|356
3CCJ|1|0|A|357
3CCJ|1|0|G|358
3CCJ|1|0|U|359
3CCJ|1|0|A|360
3CCJ|1|0|C|361
3CCJ|1|0|G|362

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains