IL_3CCL_056

3D structure

PDB id

3CCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAACU*ACGAACG

Length

13 nucleotides

Bulged bases

3CCL|1|0|C|1617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCL_056 not in the Motif Atlas

Homologous match to IL_4V9F_057

Geometric discrepancy: 0.0521

The information below is about IL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34822.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

3CCL|1|0|C|1578
3CCL|1|0|C|1579
3CCL|1|0|A|1580
3CCL|1|0|A|1581
3CCL|1|0|C|1582
3CCL|1|0|U|1583
*
3CCL|1|0|A|1612
3CCL|1|0|C|1613
3CCL|1|0|G|1614
3CCL|1|0|A|1615
3CCL|1|0|A|1616
3CCL|1|0|C|1617
3CCL|1|0|G|1618

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains