IL_3CCL_057

3D structure

PDB id

3CCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGGAAG*CAGGAAG

Length

13 nucleotides

Bulged bases

3CCL|1|0|G|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCL_057 not in the Motif Atlas

Homologous match to IL_4V9F_058

Geometric discrepancy: 0.0571

The information below is about IL_4V9F_058

Detailed Annotation

Kink-turn

Broad Annotation

Kink-turn

Motif group

IL_32016.1

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

3CCL|1|0|U|1587
3CCL|1|0|G|1588
3CCL|1|0|G|1589
3CCL|1|0|A|1590
3CCL|1|0|A|1591
3CCL|1|0|G|1592
*
3CCL|1|0|C|1602
3CCL|1|0|A|1603
3CCL|1|0|G|1604
3CCL|1|0|G|1605
3CCL|1|0|A|1606
3CCL|1|0|A|1607
3CCL|1|0|G|1608

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae