IL_3CCL_064

3D structure

PDB id

3CCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

3CCL|1|0|A|1857, 3CCL|1|0|C|1872, 3CCL|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCL_064 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.038

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3CCL|1|0|C|1854
3CCL|1|0|G|1855
3CCL|1|0|C|1856
3CCL|1|0|A|1857
3CCL|1|0|A|1858
3CCL|1|0|A|1859
3CCL|1|0|U|1860
*
3CCL|1|0|A|1869
3CCL|1|0|C|1870
3CCL|1|0|U|1871
3CCL|1|0|C|1872
3CCL|1|0|G|1873
3CCL|1|0|U|1874
3CCL|1|0|A|1875
3CCL|1|0|C|1876
3CCL|1|0|G|1877

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae