IL_3CCL_070

3D structure

PDB id

3CCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

3CCL|1|0|G|1979, 3CCL|1|0|U|1985, 3CCL|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCL_070 not in the Motif Atlas

Geometric match to IL_4V9F_071

Geometric discrepancy: 0.0419

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

3CCL|1|0|C|1975
3CCL|1|0|G|1976
3CCL|1|0|U|1977
3CCL|1|0|A|1978
3CCL|1|0|G|1979
3CCL|1|0|U|1980
3CCL|1|0|A|1981
3CCL|1|0|C|1982
3CCL|1|0|C|1983
3CCL|1|0|U|1984
3CCL|1|0|U|1985
3CCL|1|0|G|1986
*
3CCL|1|0|C|2002
3CCL|1|0|U|2003
3CCL|1|0|U|2004
3CCL|1|0|G|2005

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains