IL_3CCQ_012

3D structure

PDB id

3CCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCQ_012 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0593

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3CCQ|1|0|C|290
3CCQ|1|0|C|291
3CCQ|1|0|G|292
3CCQ|1|0|A|293
3CCQ|1|0|C|294
3CCQ|1|0|C|295
3CCQ|1|0|G|296
*
3CCQ|1|0|C|355
3CCQ|1|0|C|356
3CCQ|1|0|A|357
3CCQ|1|0|G|358
3CCQ|1|0|U|359
3CCQ|1|0|A|360
3CCQ|1|0|C|361
3CCQ|1|0|G|362

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains