IL_3CCQ_053

3D structure

PDB id

3CCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAGUGAAAG*CGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCQ_053 not in the Motif Atlas

Homologous match to IL_4V9F_054

Geometric discrepancy: 0.1062

The information below is about IL_4V9F_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41853.1

Basepair signature

cWW-L-tHH-L-tHS-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

3CCQ|1|0|C|1521
3CCQ|1|0|A|1522
3CCQ|1|0|G|1523
3CCQ|1|0|U|1524
3CCQ|1|0|G|1525
3CCQ|1|0|A|1526
3CCQ|1|0|A|1527
3CCQ|1|0|A|1528
3CCQ|1|0|G|1529
*
3CCQ|1|0|C|1662
3CCQ|1|0|G|1663
3CCQ|1|0|A|1664
3CCQ|1|0|G|1665

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P