3D structure

PDB id
3CCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
AUUCGG*CUGU
Length
10 nucleotides
Bulged bases
3CCQ|1|0|G|2033
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3CCQ_061 not in the Motif Atlas
Homologous match to IL_4V9F_062
Geometric discrepancy: 0.0554
The information below is about IL_4V9F_062
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_76758.2
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

3CCQ|1|0|A|1747
3CCQ|1|0|U|1748
3CCQ|1|0|U|1749
3CCQ|1|0|C|1750
3CCQ|1|0|G|1751
3CCQ|1|0|G|1752
*
3CCQ|1|0|C|2031
3CCQ|1|0|U|2032
3CCQ|1|0|G|2033
3CCQ|1|0|U|2034

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain B
50S ribosomal protein L3P
Chain K
50S ribosomal protein L14P

Coloring options:


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