IL_3CCQ_070

3D structure

PDB id

3CCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

3CCQ|1|0|G|1979, 3CCQ|1|0|U|1985, 3CCQ|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCQ_070 not in the Motif Atlas

Geometric match to IL_4V9F_071

Geometric discrepancy: 0.0449

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

3CCQ|1|0|C|1975
3CCQ|1|0|G|1976
3CCQ|1|0|U|1977
3CCQ|1|0|A|1978
3CCQ|1|0|G|1979
3CCQ|1|0|U|1980
3CCQ|1|0|A|1981
3CCQ|1|0|C|1982
3CCQ|1|0|C|1983
3CCQ|1|0|U|1984
3CCQ|1|0|U|1985
3CCQ|1|0|G|1986
*
3CCQ|1|0|C|2002
3CCQ|1|0|U|2003
3CCQ|1|0|U|2004
3CCQ|1|0|G|2005

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains