IL_3CCR_012

3D structure

PDB id

3CCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCR_012 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0725

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3CCR|1|0|C|290
3CCR|1|0|C|291
3CCR|1|0|G|292
3CCR|1|0|A|293
3CCR|1|0|C|294
3CCR|1|0|C|295
3CCR|1|0|G|296
*
3CCR|1|0|C|355
3CCR|1|0|C|356
3CCR|1|0|A|357
3CCR|1|0|G|358
3CCR|1|0|U|359
3CCR|1|0|A|360
3CCR|1|0|C|361
3CCR|1|0|G|362

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains