IL_3CCR_018

3D structure

PDB id

3CCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACGAAU*AGACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCR_018 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.0902

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3CCR|1|0|A|562
3CCR|1|0|C|563
3CCR|1|0|G|564
3CCR|1|0|A|565
3CCR|1|0|A|566
3CCR|1|0|U|567
*
3CCR|1|0|A|591
3CCR|1|0|G|592
3CCR|1|0|A|593
3CCR|1|0|C|594
3CCR|1|0|U|595

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain W

50S ribosomal protein L30P

Chain Y

50S ribosomal protein L32e