IL_3CCR_065

3D structure

PDB id

3CCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

3CCR|1|0|A|1857, 3CCR|1|0|C|1872, 3CCR|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCR_065 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.0536

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3CCR|1|0|C|1854
3CCR|1|0|G|1855
3CCR|1|0|C|1856
3CCR|1|0|A|1857
3CCR|1|0|A|1858
3CCR|1|0|A|1859
3CCR|1|0|U|1860
*
3CCR|1|0|A|1869
3CCR|1|0|C|1870
3CCR|1|0|U|1871
3CCR|1|0|C|1872
3CCR|1|0|G|1873
3CCR|1|0|U|1874
3CCR|1|0|A|1875
3CCR|1|0|C|1876
3CCR|1|0|G|1877

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae