IL_3CCR_109

3D structure

PDB id

3CCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGA*UACC

Length

8 nucleotides

Bulged bases

3CCR|1|0|G|1165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCR_109 not in the Motif Atlas

Homologous match to IL_4V9F_110

Geometric discrepancy: 0.211

The information below is about IL_4V9F_110

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

3CCR|1|0|G|1163
3CCR|1|0|U|1164
3CCR|1|0|G|1165
3CCR|1|0|A|1166
*
3CCR|1|0|U|1180
3CCR|1|0|A|1181
3CCR|1|0|C|1182
3CCR|1|0|C|1183

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain I

50S ribosomal protein L11P