IL_3CCS_040

3D structure

PDB id

3CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2482A

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

3CCS|1|0|C|1245, 3CCS|1|0|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCS_040 not in the Motif Atlas

Homologous match to IL_4V9F_040

Geometric discrepancy: 0.1451

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

3CCS|1|0|U|1115
3CCS|1|0|U|1116
3CCS|1|0|A|1117
3CCS|1|0|A|1118
3CCS|1|0|G|1119
3CCS|1|0|U|1120
3CCS|1|0|G|1121
*
3CCS|1|0|C|1243
3CCS|1|0|U|1244
3CCS|1|0|C|1245
3CCS|1|0|A|1246
3CCS|1|0|A|1247
3CCS|1|0|A|1248

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P