IL_3CCS_077

3D structure

PDB id

3CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2482A

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAG*CGAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCS_077 not in the Motif Atlas

Geometric match to IL_4V9F_080

Geometric discrepancy: 0.0895

The information below is about IL_4V9F_080

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

3CCS|1|0|C|2331
3CCS|1|0|A|2332
3CCS|1|0|G|2333
*
3CCS|1|0|C|2351
3CCS|1|0|G|2352
3CCS|1|0|A|2353
3CCS|1|0|A|2354
3CCS|1|0|G|2355

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain D

50S ribosomal protein L5P

Chain N

50S ribosomal protein L18P

Chain Q

50S ribosomal protein L21e