IL_3CCV_064

3D structure

PDB id

3CCV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2616A

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

3CCV|1|0|A|1857, 3CCV|1|0|C|1872, 3CCV|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCV_064 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.0328

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3CCV|1|0|C|1854
3CCV|1|0|G|1855
3CCV|1|0|C|1856
3CCV|1|0|A|1857
3CCV|1|0|A|1858
3CCV|1|0|A|1859
3CCV|1|0|U|1860
*
3CCV|1|0|A|1869
3CCV|1|0|C|1870
3CCV|1|0|U|1871
3CCV|1|0|C|1872
3CCV|1|0|G|1873
3CCV|1|0|U|1874
3CCV|1|0|A|1875
3CCV|1|0|C|1876
3CCV|1|0|G|1877

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae