IL_3CCV_089

3D structure

PDB id

3CCV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2616A

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUAGUAC*GGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCV_089 not in the Motif Atlas

Homologous match to IL_4V9F_092

Geometric discrepancy: 0.0587

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

3CCV|1|0|A|2689
3CCV|1|0|U|2690
3CCV|1|0|A|2691
3CCV|1|0|G|2692
3CCV|1|0|U|2693
3CCV|1|0|A|2694
3CCV|1|0|C|2695
*
3CCV|1|0|G|2700
3CCV|1|0|G|2701
3CCV|1|0|A|2702
3CCV|1|0|A|2703
3CCV|1|0|C|2704
3CCV|1|0|U|2705

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain E

50S ribosomal protein L6P

Chain K

50S ribosomal protein L14P