IL_3CD6_022

3D structure

PDB id

3CD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGCAG*CGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CD6_022 not in the Motif Atlas

Homologous match to IL_4V9F_022

Geometric discrepancy: 0.0669

The information below is about IL_4V9F_022

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

3CD6|1|0|C|705
3CD6|1|0|G|706
3CD6|1|0|C|707
3CD6|1|0|A|708
3CD6|1|0|G|709
*
3CD6|1|0|C|719
3CD6|1|0|G|720
3CD6|1|0|A|721
3CD6|1|0|G|722
3CD6|1|0|G|723

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain O

50S ribosomal protein L18e