IL_3CD6_054

3D structure

PDB id

3CD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGUCG*UCAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CD6_054 not in the Motif Atlas

Homologous match to IL_4V9F_055

Geometric discrepancy: 0.0514

The information below is about IL_4V9F_055

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

3CD6|1|0|G|1542
3CD6|1|0|G|1543
3CD6|1|0|U|1544
3CD6|1|0|C|1545
3CD6|1|0|G|1546
*
3CD6|1|0|U|1639
3CD6|1|0|C|1640
3CD6|1|0|A|1641
3CD6|1|0|A|1642
3CD6|1|0|C|1643

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e