IL_3CF5_008

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGAACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_008 not in the Motif Atlas

Homologous match to IL_7A0S_008

Geometric discrepancy: 0.4605

The information below is about IL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05192.8

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

3CF5|1|X|C|303
3CF5|1|X|A|304
3CF5|1|X|A|305
3CF5|1|X|G|306
*
3CF5|1|X|C|354
3CF5|1|X|G|355
3CF5|1|X|A|356
3CF5|1|X|A|357
3CF5|1|X|C|358
3CF5|1|X|G|359

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain R

50S RIBOSOMAL PROTEIN L24