IL_3CF5_017

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAAC*GCGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_017 not in the Motif Atlas

Homologous match to IL_7A0S_018

Geometric discrepancy: 0.12

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

3CF5|1|X|U|716
3CF5|1|X|G|717
3CF5|1|X|A|718
3CF5|1|X|A|719
3CF5|1|X|A|720
3CF5|1|X|C|721
*
3CF5|1|X|G|736
3CF5|1|X|C|737
3CF5|1|X|G|738
3CF5|1|X|G|739
3CF5|1|X|A|740
3CF5|1|X|G|741

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains