IL_3CF5_033

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

3CF5|1|X|U|1019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_033 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1215

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

3CF5|1|X|U|1015
3CF5|1|X|C|1016
3CF5|1|X|C|1017
3CF5|1|X|C|1018
3CF5|1|X|U|1019
3CF5|1|X|A|1020
3CF5|1|X|A|1021
3CF5|1|X|A|1022
*
3CF5|1|X|U|1161
3CF5|1|X|A|1162

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain G

50S RIBOSOMAL PROTEIN L13

Chain N

50S RIBOSOMAL PROTEIN L20