IL_3CF5_040

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUUC*GUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_040 not in the Motif Atlas

Homologous match to IL_7A0S_040

Geometric discrepancy: 0.1414

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

3CF5|1|X|A|1175
3CF5|1|X|U|1176
3CF5|1|X|U|1177
3CF5|1|X|C|1178
*
3CF5|1|X|G|1196
3CF5|1|X|U|1197
3CF5|1|X|C|1198
3CF5|1|X|U|1199

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain O

50S RIBOSOMAL PROTEIN L21

Chain W

50S RIBOSOMAL PROTEIN L30