IL_3CF5_045
3D structure
- PDB id
- 3CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- 3CF5|1|X|G|1279
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3CF5_045 not in the Motif Atlas
- Homologous match to IL_7A0S_045
- Geometric discrepancy: 0.2093
- The information below is about IL_7A0S_045
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
3CF5|1|X|A|1275
3CF5|1|X|U|1276
3CF5|1|X|G|1277
3CF5|1|X|A|1278
3CF5|1|X|G|1279
3CF5|1|X|U|1280
3CF5|1|X|A|1281
3CF5|1|X|A|1282
*
3CF5|1|X|U|1994
3CF5|1|X|G|1995
3CF5|1|X|A|1996
3CF5|1|X|A|1997
3CF5|1|X|A|1998
3CF5|1|X|U|1999
3CF5|1|X|U|2000
Current chains
- Chain X
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain C
- 50S RIBOSOMAL PROTEIN L4
- Chain N
- 50S RIBOSOMAL PROTEIN L20
- Chain P
- 50S RIBOSOMAL PROTEIN L22
- Chain Y
- 50S RIBOSOMAL PROTEIN L32
Coloring options: