IL_3CF5_053

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAU*AAACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_053 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.1012

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

3CF5|1|X|C|1451
3CF5|1|X|U|1452
3CF5|1|X|A|1453
3CF5|1|X|U|1454
*
3CF5|1|X|A|1567
3CF5|1|X|A|1568
3CF5|1|X|A|1569
3CF5|1|X|C|1570
3CF5|1|X|G|1571

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains