IL_3CF5_056

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*UCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_056 not in the Motif Atlas

Geometric match to IL_4WF9_087

Geometric discrepancy: 0.1939

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

3CF5|1|X|C|1491
3CF5|1|X|A|1492
3CF5|1|X|A|1493
3CF5|1|X|G|1494
*
3CF5|1|X|U|1530
3CF5|1|X|C|1531
3CF5|1|X|A|1532
3CF5|1|X|G|1533

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains